NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364927_0064557

Scaffold Ga0364927_0064557


Overview

Basic Information
Taxon OID3300034148 Open in IMG/M
Scaffold IDGa0364927_0064557 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 18_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)977
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009755Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0364927_0064557_2_844F009755N/AYNGQLVAVVNNGSNSVALYRRVGDALRFDRLVSTTSAPVSVDFGNDHMYVAGATTIDSFVFEHDSVGWLDGTANLVLANGGGPPDGSTAQVGVVDEKHVLVTLKADPDPGTVDVVALDHGTVSESAPTAVSGPVGSLAPFGFSVFRDGTALITLAHSGQDGLFRDGAFAAVIDSAGQAGPCWTTRVGKYVFTANTGSQTLSRLVGTGSHLFLDASVAATVATGNPLDVDAAGGVLGVIDHGGGQSHLSLFTYNVFGELSPRGAPITINVPDANGVAIMVR
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